* Indicates listing
on more than one bibliography.
N.C. Seeman, MIND3:
A FORTRAN Patterson Superposition Program for the IBM 1130. In:
Crystallographic Computing, F.R. Ahmed, ed., Munksgaard, Copenhagen (1970), pp.
87-89.
B. Berking and N.C.
Seeman, The Crystal and Molecular Structure of
1,6;2,3-Dianhydro-b-D-gulopyranose. Acta Crystallographica B27,1752-1760
(1971).
N.C. Seeman, J.L.
Sussman, H.M. Berman and S.-H. Kim, Nucleic Acid Conformation: The Crystal
Structure of a Naturally Occurring Dinucleoside Phosphate (UpA). Nature New
Biology 233, 90-92 (1971).
N.C. Seeman, E.L.
McGandy and R.D. Rosenstein, The Crystal and Molecular Structure of
Pyrazole-3-L-Alanine. Journal of the American Chemical Society 94, 1717-1720
(1972).
J.J. Madden, E.L.
McGandy and N.C. Seeman, The Crystal Structure of the Orthorhombic Form of
L-(+)-Histidine. Acta Crystallographica B28, 2377-2382 (1972).
J.J. Madden, E.L.
McGandy, N.C. Seeman, M.M. Harding and A. Hoy, The Crystal Structure of the
Monoclinic Form of L-(+)-Histidine. Acta Crystallographica B28, 2382-2389
(1972).
J.L. Sussman, N.C.
Seeman, S.-H. Kim and H.M. Berman, The Crystal Structure of a Naturally
Occurring Dinucleoside Phosphate: Uridylyl-3',5'-adenosine. Model for RNA Chain
Folding. Journal of Molecular Biology 66, 403-421 (1972).
N.C. Seeman,
Determinata la Struttura Cristallina di un Dinucleosidofosfato Naturale (UpA).
In: Enciclopedia Della Scienze E Della Tecnica, Annuario Della EST, Mondadori,
Milano (1972), pp. 68-69 (in Italian).
S.-H. Kim, H.M.
Berman, N.C. Seeman and M.D. Newton, Seven Basic Conformations of Nucleic Acid
Structural Units. Acta Crystallographica B29, 703-710 (1973).
J.M. Rosenberg,
N.C. Seeman, J.-J.P. Kim, F.L. Suddath, H.B. Nicholas and A. Rich, Double Helix
at Atomic Resolution. Nature 243, 150-154 (1973).
R.O. Day, N.C.
Seeman, J.M. Rosenberg and A. Rich, A Crystalline Fragment of the Double Helix:
The Structure of the Dinucleoside Phosphate Guanylyl-3',5'-cytidine. Proceedings
of the National Academy of Sciences (USA) 70, 849-853 (1973).
S.-H. Kim, F.L.
Suddath, G.J. Quigley, A. McPherson, J.L. Sussman, A.H.-J. Wang, N.C. Seeman
and A. Rich, The Three Dimensional Tertiary Structure of Transfer RNA. Science
185, 435-440 (1974).
S.-H. Kim, J.L.
Sussman, G.J. Quigley, F.L. Suddath, A. McPherson, A.H.-J. Wang, N.C. Seeman
and A. Rich, A Generalized Structure for Transfer RNA. Proceedings of the
National Academy of Sciences (USA) 71, 4970-4974 (1974).
N.C. Seeman, R.O. Day
and A. Rich, Nucleic Acid-Mutagen Interactions: The Crystal Structure of
Adenylyl-3',5'-uridine Plus 9-Aminoacridine. Nature 253, 324-326 (1975).
G.J. Quigley,
A.H.-J. Wang, N.C. Seeman, F.L. Suddath, A. Rich, J.L. Sussman and S.-H. Kim,
Hydrogen Bonding in Yeast Phenylalanine Transfer RNA. Proceedings of the
National Academy of Sciences (USA) 72, 4866-4870 (1975).
G.J. Quigley, N.C.
Seeman, A.H.-J. Wang, F.L. Suddath and A. Rich, Yeast Phenylalanine Transfer
RNA: Atomic Coordinates and Torsion Angles. Nucleic Acids Research 2, 2329-2341
(1975).
S.-H Kim, F.L.
Suddath, G.J. Quigley, A. McPherson, J.L. Sussman, A.H.-J. Wang, N.C. Seeman
and A. Rich, The Tertiary Structure of Yeast Phenylalanine Transfer RNA. In:
Structure and Conformations of Nucleic Acids and Protein-Nucleic Acid
Interactions, ed by M. Sundaralingam and S.T. Rao, University Park Press,
Baltimore, (1975) pp. 7-14.
N.C. Seeman, J.M.
Rosenberg and A. Rich, Sequence Specific Recognition of Double Helical Nucleic
Acids by Proteins. Proceedings of the National Academy of Sciences (USA) 73,
804-808 (1976).
J.M Rosenberg, N.C.
Seeman, R.O. Day and A. Rich, RNA Double Helices Derived from Studies of Small
Fragments. Biochemical and Biophysical Research Communications 69, 979-987
(1976).
A. Rich and N.C.
Seeman, RNA Double Helices at Atomic Resolution. In: Handbook of Biochemistry
and Molecular Biology, vol II, 3rd edition, ed. by G. Fasman, CRC Press,
Cleveland (1976), pp. 413-419.
N.C. Seeman, J.M
Rosenberg, F.L. Suddath, J.-J.P. Kim and A. Rich, RNA Double Helical Fragments
at Atomic Resolution I: The Crystal and Molecular Structure of
Adenylyl-3',5'-uridine Hexahydrate. Journal of Molecular Biology 104, 109-144
(1976).
J.M. Rosenberg,
N.C. Seeman, R.O. Day and A. Rich, RNA Double Helical Fragments at Atomic
Resolution II: The Crystal and Molecular Structure of Guanylyl-3',5'-cytidine
Nonahydrate. Journal of Molecular Biology 104, 145-167 (1976).
A. Rich, N.C.
Seeman and J.M. Rosenberg, Protein Recognition of Base Pairs in a Double Helix.
In: Nucleic Acid-Protein Recognition, ed. by H.G. Vogel, Academic Press, New
York (1977), pp. 361-374.
N.H. Woo, N.C.
Seeman and A. Rich, The Crystal Structure of Putrescine Diphosphate: A Model
for Amine-Nucleic Acid Interactions. Biopolymers 18, 539-552 (1979).
N.C. Seeman, Single
Crystal Crystallography. In: Stereodynamics of Molecular Systems, ed. by R.H.
Sarma, Pergamon Press, New York (1979), pp. 75-109.
N.C. Seeman, Single
Crystal Crystallography for Nucleic Acid Structural Studies. In: Geometry and
Dynamics of Nucleic Acids, ed. by R.H. Sarma, Pergamon Press, New York (1980),
pp. 47-82.
N.C. Seeman,
Crystallographic Investigation of Oligonucleotide Structure. In: Geometry and
Dynamics of Nucleic Acids, ed. by R.H. Sarma, Pergamon Press, New York (1980),
pp. 109-142.
J.F. Hyde, J.A.
Zubieta and N.C. Seeman, The Crystal and Molecular Structure of
((Mo(S-CH2-CH2-S-CH2-CH2-S)2)2Ag)PF6.1/2 DMF, A Thiolate-Bridged Mixed Metal
Cluster. Inorganica Chemica Acta 54, L137-L139 (1981).
J.A. DiVerdi, S.J.
Opella, R.-I. Ma, N.R. Kallenbach and N.C. Seeman, 31P NMR of DNA in Eukaryotic
Chromosomal Complexes. Biochemical and Biophysical Research Communications 102,
885-890 (1981).
R.D. Rosenstein, M.
Oberding, J. Hyde, J.A. Zubieta, K.D. Karlin and N.C. Seeman, The Crystal
Structure of Hypoxanthinium Nitrate Monohydrate: Intercalation of Water Between
Purines. Crystal Structure Communications 11, 1507-1513 (1982).
R.D. Sheardy and
N.C. Seeman, The Construction of an Oligonucleotide Containing
5-Iodo-Deoxyuridine. Journal of Organic Chemistry 51, 4301-4303 (1986).
J.-H. Chen, N.C.
Seeman and N.R. Kallenbach, Tracts of A-T Nucleotide Pairs Retard the
Electrophoretic Mobility of Short DNA Duplexes. Nucleic Acids Research 16,
6803-6812 (1988).
V.N. Morozov, J.
Sherman, N.R. Kallenbach, S.M. Du and N.C. Seeman, A Scanning Tunneling
Microscopy Study of the Formation and Chemical Activation of Step Defects on
the Basal Plane of Pyrolytic Graphite, Journal of Microscopy 170, pt. 3, 237-245
(1993).
V.N. Morozov, N.C.
Seeman and N.R. Kallenbach, New Methods for Depositing and Imaging Molecules in
Scanning-Tunneling Microscopy, Scanning Microscopy International 7, 757-779
(1994).
*H. Qiu, J.C. Dewan
and N.C. Seeman, A DNA Decamer with a Sticky End: The Crystal Structure of
d-CGACGATCGT. J. Mol. Biol. 267, 881-898 (1997).
*A. V. Vologodskii,
X. Yang and N.C. Seeman, Non-Complementary DNA Helical Structure Induced by
Positive Torsional Stress, Nucleic Acids Resesrch 26, 1503-1508 (1998).
*A. Podtelezhnikov,
C. Mao, N.C. Seeman & A. Vologodskii, Multimerization-Cyclization of DNA
Fragments as a Method of Conformational Analysis, Biophys. J. 79, 2692-2704
(2000).
*R. Sha, F. Liu and
N.C. Seeman, Atomic Force Measurement of the Interdomain Angle in Symmetric
Holliday Junctions, Biochemistry 41, 5950-5955 (2002).
L. Zhu, O. dos
Santos, N.C. Seeman and J.W. Canary, Reaction of N3-Benzoyl-3',
5'-O-(di-tert-butylsilanediyl)uridine with Hindered Electrophiles:
Intermolecular N3 to 2'-O Protecting Group Transfer, Nucleosides, Nucleotides
& Nucleic Acids 21, 723-735 (2002).
*P. Sa-Ardyen, A.V.
Vologodskii and N.C. Seeman, The Flexibility of DNA Double Crossover Molecules.
Biophysical Journal 84, 3829-3837 (2003).
*P.S.
Lukeman, A. Mittal, & N.C. Seeman, Two Dimensional PNA/DNA Arrays: Estimating the Helicity of Unusual
Nucleic Acid Polymers, Chemical Communications 2004, 1694-1695 (2004).
P.
Paukstelis, J. Nowakowski, J.J. Birktoft and N.C.
Seeman, The Crystal Structure of a Continuous Three-Dimensional DNA Lattice,
Chemistry and Biology 1`1, 1119-1126 (2004).
*W.
Shen, M. Bruist, S. Goodman & N.C. Seeman, A
Nanomechanical Device for Measuring the Excess Binding Energy of Proteins that
Distort DNA, Angew. Chem. Int. Ed. 43, 4750-4752
(2004); Angew.Chem. 116, 4854-4856 (2004).
* W.B.
Sherman & N.C. Seeman, Design of Low-Stress Nucleic Acid Nanotubes, Bioiphys. J.,
90, 4546-4557 (2006).
P.S. Lukeman, M.
Stevenson & N.C. Seeman, Morphology Change of
Calcium Carbonate in the Presence of Polynucleotides, Cryst. Growth & Design 8, 1200-1202
(2008).
Y. Liu,
R. Wang, L. Ding, R. Sha, P.S. Lukeman, J. W. Canary & N.C. Seeman,
Thermodynamic Analysis of Nylon Nucleic Acids, ChemBioChem 9, 1641-1648 (2008).
J. Lin,
N.C. Seeman & N. Vaidehi, Molecular Dynamics Simulations of Insertion of
Chemically Modified DNA Nanostructures into a Water-Chloroform Interface, Biophys. J.
95, 1099-1107 (2008).
*Y. Liu, R. Sha, R.
Wang, L. Ding , J.W. Canary, & N.C. Seeman, 2',2'-Ligation
Demonstrates the Thermal Dependence of DNA-Directed Positional Control, Tetrahedron
64, 9417-8422 (2008).
Y. Liu, A. Kuzuya,
R. Sha, J. Guillaume, R. Wang, J.W. Canary & N.C. Seeman, Coupling Across a
DNA Helical Turn Yields a Hybrid DNA/Organic Catenane Doubly Tailed with
Functional Termini, J. Am. Chem. Soc. 130, 10882-10883 (2008).
J. Zheng, P.S.
Lukeman, W.B. Sherman, C. Micheel, A. P. Alivisatos, P.E. Constantinou &
N.C. Seeman, Metallic Nanoparticles Used to Estimate the Structural Integrity
of DNA Motifs, Biophys.
J. 95, 3340-3348 (2008).
R.
Dreyfus, M.E. Leunissen, R. Sha, A.V. Tkachenko, N.C. Seeman, D.J. Pine & P.M. Chaikin, A simple quantitative model for the
reversible association of DNA coated colloids,
Phys. Rev.
Lett. 102, Article 048301
(2009).
*N.
Jonoska, N.C. Seeman & G. Wu, On the Existence of Reporter Strands in
DNA-Based Graph Structures, Theor. Computer
Sci. 410, 1448-1460 (2009).
M. Leunissen, R.
Dreyfus, R. Sha, T. Wang, N.C. Seeman, D.J. Pine, & P.M. Chaikin, Towards
Self-Replicating Materials of DNA-Functionalized Colloids, Soft Matter (2009).
M.E. Leunissen, R.Dreyfus, F.C. Cheong, D.G. Grier, R.
Sha, N.C. Seeman & P.M. Chaikin, Switchable Self-Protected Attractions in
DNA-Functionalized Colloids, Nature Materials, 8, 590-595 (2009).
*C.H.
Spink, L. Ding, Q. Yang, R.D. Sheardy & N.C. Seeman, Thermodynamics of
Forming a Parallel Holliday Crossover, Biophys. J. 97, 528-538 (2009).
*J. Zheng, J.J.
Birktoft, Y. Chen, T. Wang, R. Sha, P.E. Constantinou, S.L. Ginell, C. Mao,
& N.C. Seeman, From Molecular to Macroscopic via the Rational Design of a
Self-Assembled 3D DNA Crystal, Nature 461, 74-77 (2009).
M.E.
Leunissen, R. Dreyfus, R. Sha, N.C. Seeman & P. M Chaikin, A quantitative study of the association thermodynamics
and kinetics of DNA-coated particles for different functionalization schemes, J. Am. Chem. Soc.
132, 1903-1913 (2010).
*X. Wang, X. Zhang, C. Mao & N.C. Seeman, Double-Stranded
DNA Homology Produces a Physical Signature, Proc.
Nat. Acad. Sci. (USA) 107,
12547-12552 (2010).
*H. Gu,
W. Yang & N.C. Seeman, A DNA Scissors Device Used to Measure MutS Binding
to DNA Mis-Pairs, J. Am. Chem. Soc. 132, 4352-4357 (2010).
R.
Dreyfus, M.E. Leunissen, R. Sha, A. Tkachenko, N.C. Seeman, D.J. Pine, P.M.
Chaikin, Aggregation-disaggregation transition of DNA-coated colloids: Experiments and theory, Phys. Rev. E.
81, 041404 (2010).
* M.I. Lvovska, N.C.
Seeman, R. Sha, T.R. Globus, T.B. Khromova & T.S. Dorofeeva, THz
Characterization of DNA Four-Way Junctions and its Components, IEEE Trans.
Nanotech. 9, 610-617 (2010).
* T. Wang, R.
Sha, J.J. Birktoft, J. Zheng, C. Mao & N.C. Seeman, A DNA Crystal Designed
to Contain Two Molecules per Asymmetric Unit, J. Am. Chem. Soc. 132, 15471-15473
(2010).
* Q. Xu, L.
Feng., R. Sha, N.C. Seeman & P.M. Chaikin, Subdiffusion of a Sticky
Particle on a Surface, Phys. Rev. Lett. 106, 228102 (2011).
* A.
Lehmuskero, N. Hakulinen, H. Lajunen, B. Bai, L. Huang, J. Turunen, J. Zheng,
R. Sha, P. Vahimaa & N. C. Seeman, Linear
Birefringence Magnitude of Artificial DNA Crystals, Optical Materials Express 1, 936-942
(2011).
* T. Wang, R. Sha, R. Dreyfus, M.E. Leunissen, C.
Maass, D. Pine, P.M. Chaikin & N.C. Seeman, Self-Replication of
Information-Bearing Nanoscale Patterns, Nature, 478,
225-228 (2011).
* T. Wang, D.
Schiffels, S. M. Cuesta, D. K. Fygenson & N. C. Seeman, Design and Characterization of 1D Nanotubes and 2D Periodic
Arrays Self-Assembled From DNA Multi-Helix Bundles, J. Am. Chem. Soc. 134, 1606-1616 (2012).
* N.
Nguyen, J.J. Birktoft,
R. Sha, T. Wang, J. Zheng, P.E. Constantinou, S.L. Ginell, Y. Chen,
C. Mao & N.C. Seeman, The Absence of Tertiary Interactions in
a Self-Assembled DNA Crystal Structure, J. Mol. Recognition 25, 234-237 (2012).
* N. Jonoska
& N.C. Seeman, Computing by Molecular Self-Assembly, Interface Focus 2, 504-511 (2012).
* K.-T. Wu, L. Feng, R. Sha, R. Dreyfus, A.Y.
Grosberg, N.C. Seeman & P.M. Chaikin, Polygamous Particles, Proc. Nat. Acad.
Sci. (USA) 109, 18731-18736 (2012).
* L. Feng, R. Sha, N.C. Seeman and P.M. Chaikin,
Topological Interaction by Entangled DNA Loops, Phys. Rev. Lett. 109, 188301 (2012).
* Y. Liu, R. Wang, L. Ding, R. Sha, N.C. Seeman &
J.W. Canary, Templated Synthesis of Nylon Nucleic Acids and
Characterization by Nuclease Digestion, Chem. Sci., 3, 1930-1937 (2012).
* R. Sha, J.J. Birktoft, N. Nguyen, A.R.
Chandrasekaran, J. Zheng, X. Zhao, C. Mao, N.C. Seeman, Self-Assembled DNA
Crystals: The Impact on Resolution of 5'-Phosphates and the DNA Source, NanoLett. 13,
793-797 (2013).
*D. Niu, R. Sha, H. Jiang, J.W. Canary
& N.C. Seeman, The Unusual and Dynamic Character of PX-DNA, Nucl. Acids Res.
43, 7201-7206 (2015).
*N.C. Seeman, R. Sha, J. J. Birktoft, J. Zheng, W. Liu, T. Wang and C. Mao, Designed 3D DNA Crystals, Methods in Mol. Biol. 1500, 257-268 (2017).Crosslinking, Chem. Comm., 52, 8014-8017 DOI:
10.1039/c6cc03695c (2016).*H. Joshi, A. Kanshik, N.C. Seeman, P.
Maiti, Nanoscale Structure and Elasticity of Pillared DNA Nanotubes, ACS Nano 10,
7780-7791 (2016).
*C. Simmons, F. Zhang, J.J. Birktoft, X.
Qi, D. Han, Y. Liu, R. Sha, H.O. Abdallah, C. Hernandez, Y. Ohayon, N.C. Seeman,
H. Yan, Construction and Structure Determination of a Three-dimensional DNA
Crystal, J.
Am. Chem. Soc. 138, 10047-10054, DOI:
10.1021/jacs.6b06508
(2016).
*P.
Paukstelis, N.C. Seeman, 3D DNA Crystals and Nanotechnology, Crystals 6,
97-110, DOI:10.3390/cryst6080097 (2016).
*J. Melinger, R. Sha, C. Mao, N.C. Seeman,
M. Ancona, Fluorescence and Energy Transfer in Dye-Labeled DNA Crystals, J. Phys. Chem. B.
120,12287-12292 (2016).
*X.
Wang, R. Sha, M. Kristiansen, C. Hernandez, Y. Hao, C. Mao, J. W. Canary &
N.C. Seeman, An Organic Semi-Conductor Organized into 3D DNA Arrays via
'Bottom-Up' Rational Design, Angew.
Chemie 56, 6445-6448, DOI: 10.1002/anie.201700462 (2017).
*Y. Zhang, A. McMullen, L.-L. Pontani, X.
He, R. Sha, N.C. Seeman & P.M. Chaikin, Sequential Self-Assembly of
DNA-Functionalized Drops, Nature Comm. 8
(21), DOI: 10.1038/s41467-017-00070-0 (2017).
*C.
R. Simmons, F. Zhang, T. MacCulloch, N. Edidne-Fahmi, N. Stephanopoulos, Y.
Liu, N.C. Seeman & H. Yan, J. Am.
Chem. Soc. 139, 11254-11260 (2017).
*F.W.
Conn, M.A. Jong, A. Tan, R. Tseng, E. Park, Y.P. Ohayon, R. Sha, C. Mao &
N.C. Seeman, Time Lapse Microscopy of Temperature Control During Self-Assembly
of 3D DNA Crystals, J. Cryst. Growth 476, 1-5, DOI: 10.1016/j.jcrysgro.2017.07.019
(2017).
*C. Hernandez, J.J. Birktoft, Y.P. Ohayon,
A.R. Chandrasekaran, H. Abdallah, R. Sha, V. Stojanoff, C. Mao & N.C.
Seeman, Stressed DNA: Self-Assembly of 3D Crystals Containing a
Torsionally-Stressed Component, Cell
Chem. Biol. 24, 1401-1406 (2017).
*X.
He, R. Sha, R. Zhuo, Y. Mi, P.M. Chaikin & N.C. Seeman, Exponential
Growth and Selection in *Self-Replicating Materials from DNA Origami Rafts, Nat. Mat. 16, 993-997 (2017).
N.C.
Seeman & H.F Sleiman, DNA Nanotechnology, Nature Reviews/Materials 3, article 17068 23 pages (2017).
*M.
Y. Ben Zion, X. He, C.C. Maas, R. Sha, N.C. Seeman & P.M. Chaikin,
Self-Assembled Three-Dimensional Chiral Colloidal Architecture, Science 358, 633-636 (2017).
*X. Wang, C. Li, D. Niu, R. Sha, N.C.
Seeman, J.W. Canary, The Construction of a DNA Origami Based Molecular
Electro-Optical Modulator, NanoLett.
18, 2112-2115 (2018).
*R. Sha, L. Xiang, C. Liu, A. Balaeff, Y.
Zhang, P. Zhang, Y. Li, D.N. Beratan, N.J. Tao, N.C. Seeman, Charge Splitters
and Charge Transport Junctions Based on Guanine Quadruplexes, Nature Nanotech. 13, 316-321 (2018).
*Y. Zhang, X. He, R. Zhuo, R. Sha, J.
Brujic, N.C. Seeman, P.M. Chaikin, Multi-valent, Multi-flavored Droplets by
Design, Proc. Nat. Acad. Sci. 115,
9086-9091 (2018).
*J. Zhao, Y. Zhao, Z. Li, Y. Wang, R. Sha,
N.C. Seeman, C. Mao, Modulating Self-Assembly of DNA Crystals with Rationally
Designed Agents, Angew. Chemie , https://doi.org/10.1002/anie.201809757
(2018).
*R. Zhuo, F. Zhao, X. He, R. Sha, N.C.
Seeman, PM. Chaikin, Litters of Self-Replicating Origami Cross-Tiles, Proc. Nat. Acad. Sci. (USA)
116,1952-1957 (2019).
*Y. Ohayon, C. Hernandez, A.R.
Chandrasekaran, X. Wang, H. Abdullah, M. Jong, M. Mohsen. R. Sha, J. Birktoft,
P. Lukeman, P. Chaikin, S. Ginell, C. Mao, N.C. Seeman, Designing Higher
Resolution Self-Assembled 3D DNA Crystals via
Strand Terminus Modifications, ACS Nano,
in press (2019).
*H. Pei, R. Sha, X. Wang, M. Zheng, C. Fan,
J.W. Canary, N.C. Seeman, Organizing End-Site-Specific SWCNTs in Specific Loci
Using DNA, J. Am. Chem. Soc., in press.
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