DNA Nanotechnology
Bibliography from Ned Seeman's Laboratory.

* Indicates listing on more than one bibliography.

*N.C. Seeman, Nucleic Acid Junctions: Building Blocks for Genetic Engineering in Three Dimensions. In: Biomolecular Stereodynamics, ed. by R.H. Sarma, Adenine Press, New York (1981), pp. 269-277.

*N.C. Seeman, Nucleic Acid Junctions and Lattices. Journal of Theoretical Biology 99, 237-247 (1982).

N.C. Seeman and N.R. Kallenbach, Design of Immobile Nucleic Acid Junctions. Biophysical Journal 44, 201-209 (1983).

*N.C. Seeman and N.R. Kallenbach, Nucleic Acid Junctions, The Tensors of Life? In: Nucleic Acids: The Vectors of Life, ed. by B. Pullman and J. Jortner, D. Reidel, Dordrecht, 183-200 (1983).

*N.R. Kallenbach, R.-I. Ma and N.C. Seeman, An Immobile Nucleic Acid Junction Constructed from Oligonucleotides. Nature 305, 829-831 (1983).

N.C. Seeman, The Interactive Manipulation and Design of Macromolecular Architecture Utilizing Nucleic Acid Junctions. Journal of Molecular Graphics 3, 34-39 (1985).

N.C. Seeman, Macromolecular Design, Nucleic Acid Junctions and Crystal Formation. Journal of Biomolecular Structure and Dynamics 3, 11-34 (1985).

R.-I. Ma, N.R. Kallenbach, R.D. Sheardy, M.L. Petrillo and N.C. Seeman, 3-Arm Nucleic Acid Junctions Are Flexible. Nucleic Acids Research 14, 9745-9753 (1986).

B.H. Robinson and N.C. Seeman, The Design of a Biochip: A Self-Assembling Molecular-Scale Memory Device. Protein Engineering 1, 295-300 (1987).

*N.C. Seeman, Physical Models for Exploring DNA Topology. Journal of Biomolecular Structure and Dynamics 5, 997-1004 (1988).

*N.C. Seeman and N.R. Kallenbach, Nucleic Acid Junctions: A Successful Experiment in Macromolecular Design. In: Molecular Structure: Chemical Reactivity and Biological Activity, ed. by J.J. Stezowski J.-L. Huang and M.-C. Shao, Oxford University Press, Oxford, (1988) pp. 189-194.

M.L. Petrillo, C.J. Newton, R.P. Cunningham, R.-I. Ma, N.R. Kallenbach and N.C. Seeman. The Ligation and Flexibility of 4-Arm DNA Junctions. Biopolymers, 27, 1337-1352 (1988).

N.C. Seeman, Nanoscale Assembly and Manipulation of Branched DNA: A Biological Starting Point for Nanotechnology, NANOCON Proceedings, ed. by J. Lewis and J.L. Quel, NANOCON, P.O. Box 40176, Bellevue, WA 98004, pp. 101-123; transcript of oral presentation, pp. 30-36 (1989).

J.-H. Chen, N.R. Kallenbach and N.C. Seeman, A Specific Quadrilateral Synthesized from DNA Branched Junctions. Journal of the American Chemical Society 111, 6402-6407 (1989).

N.C. Seeman, De Novo Design of Sequences for Nucleic Acid Structure Engineering, Journal of Biomolecular Structure and Dynamics 8, 573-581 (1990).

J. Chen and N.C. Seeman, The Synthesis from DNA of a Molecule with the Connectivity of a Cube, Nature 350, 631-633 (1991).

*Y. Wang, J.E. Mueller, B. Kemper , and N.C. Seeman, The Assembly and Characterization of 5-Arm and 6-Arm DNA Junctions, Biochemistry 30, 5667-5674 (1991).

N.C. Seeman, DNA Structural Engineering Utilizing Immobile Junctions, Current Opinion in Structural Biology 1, 653-661 (1991).

N.C. Seeman, The Construction of 3-D Stick Figures from Branched DNA, DNA and Cell Biology 10, 475-486 (1991).

N.C. Seeman, The Use of Branched DNA for Nanoscale Fabrication, Nanotechnology 2, 149-159 (1991).

Y. Zhang and N.C. Seeman, A Solid-Support Methodology for the Construction of Geometrical Objects from DNA, Journal of the American Chemical Society 114, 2656-2663 (1992).

N.C. Seeman, Nanoengineering with DNA, Biomolecular Materials: Materials Research Society Symposium Proceedings 292, 123-134 (1993).

N.C. Seeman, Branched DNA: A 3-D Structural Design System, Clinical Chemistry 39, 722-724 (1993).

*N.C. Seeman, J. Chen, S.M. Du, J.E. Mueller, Y. Zhang, T.-J. Fu, H. Wang, Y. Wang, and S. Zhang, Synthetic DNA Knots and Catenanes, New Journal of Chemistry 17, 739-755 (1993).

N.C. Seeman, Structural Control and Engineering of Nucleic Acids, In: Concepts in Protein Engineering and Design, P. Wrede and G. Schneider, eds., Walter-de-Gruyter, Berlin, 319-343 (1994).

Y. Zhang and N.C. Seeman, The Construction of a DNA Truncated Octahedron, Journal of the American Chemical Society 116, 1661-1669 (1994).

N.C. Seeman, Y. Zhang, and J. Chen, DNA Nanoconstructions, Journal of Vacuum Science and Technology A12, 1895-1903 (1994).

*N.C. Seeman, Y. Zhang, T.-J. Fu, S. Zhang, Y. Wang and J. Chen, Chemical Synthesis of Nanostructures, Biomolecular Materials by Design: Materials Research Society Symposium Proceedings 330, 45-56 (1994).

*N.C. Seeman, Y. Zhang, S.M. Du, H. Wang, J.E. Mueller, Y. Wang, B. Liu, J. Qi and J. Chen, The Control of DNA Structure and Topology: An Overview., Molecularly Designed Ultrafine/Nanostructured Materials: Materials Research Society Symposium Proceedings 351 57-66 (1994).

B. Liu, N.B. Leontis and N.C. Seeman, Bulged 3-arm DNA Branched Junctions as Components for Nanoconstruction, Nanobiology 3, 177-188 (1994). *N.C. Seeman, Molecular Craftwork with DNA, The Chemical Intelligencer 1(3), 38-47 (1995).

*N.C. Seeman, Y. Zhang, S.M. Du and J. Chen, Construction of DNA Polyhedra and Knots Through Symmetry Minimization, In: Supramolecular Stereochemistry, ed. by J. Siegel, NATO Advanced Research Workshops Series, Kluwer, Dordrecht, 27-32 (1995).

*N.C. Seeman, H. Wang, J. Qi., X.J. Li, X.P. Yang, Y. Wang, H. Qiu, B. Liu, Z. Shen, W. Sun, F. Liu, J.J. Molenda, S.M. Du, J. Chen, J.E. Mueller., Y. Zhang, T.-J. Fu, and S. Zhang, DNA Nanotechnology and Topology. In: Biological Structure and Dyinamics, ed. by R.H. Sarma and M.H. Sarma, Adenine Press, New York, vol. 2, pp. 319-341 (1996).

J. Qi, X. Li, X.P. Yang and N.C. Seeman, The Ligation of Triangles Built from Bulged Three-Arm DNA Branched Junctions, Journal of the American Chemical Society, 118, 6121-6130 (1996).

X.J. Li, X.P. Yang, J. Qi, and N.C. Seeman, Antiparallel DNA Double Crossover Molecules as Components for Nanoconstruction, Journal of the American Chemical Society, 118, 6131-6140 (1996).

N.C. Seeman, Design and Engineering of Nucleic Acid Nanoscale Assemblies, Current Opinion in Structural Biology, 6, 519-526 (1996).

*C. Mao, W. Sun and N.C. Seeman, Construction of Borromean Rings from DNA, Nature 386, 137-138 (1997).

*N.C.Seeman, J. Chen, Y. Zhang, T.-J. Fu, X. Li, X. Yang, Y. Wang, J. Qi, B. Liu and F. Liu, Control of Structure and Topology in DNA Nanotechnology. In: Molecular Nanotechnology: Biological Approaches and Novel Applications, ed. by S.A. Minden, IBC Libraries, Southborough, MA, Chapter 2.2 (31 pages) (1997).

*H. Qiu, J.C. Dewan and N.C. Seeman, A DNA Decamer with a Sticky End: The Crystal Structure of d-CGACGATCGT. J. Mol. Biol. 267, 881-898 (1997).

N.C. Seeman, DNA Components for Molecular Architecture. Accounts of Chemical Research 30, 357-363 (1997).

N.C. Seeman, J. Qi, X. Li, X. Yang, N.B. Leontis, B. Liu, Y.Zhang, S.M. Du and J. Chen, The Control of DNA Structure: From Topological Modules to Geometrical Modules. In: Modular Chemistry, ed. by J. Michl, Kluwer, 95-104 (1997).

X. Yang, B. Liu, A. Vologodskii, B. Kemper and N.C. Seeman, Torsional Control of Double Stranded DNA Branch Migration. Biopolymers 45, 69-83 (1998).

N.C. Seeman, DNA Nanotechnology: Novel DNA Constructions. Annual Review of Biophysics and Biomolecular Structure 27, 225-248 (1998).

N.C. Seeman, DNA Nanotechnology, In: WTEC Workshop Report on R & D Status and Trends in Nanoparticles, Nanostructured Materials, and Nanodevices in the United States, ed. by R.W. Siegel, E. Hu and M.C. Roco, International Technology Research Institute,Baltimore (1998).

N.C. Seeman, Directing the Structure of Matter through Nanotechnology, Proceedings of IEEE International Joint Symposia on Intelligence and Systems IEEE Computer Society, Los Alamitos, CA, 146-150 (1998).

E. Winfree, F. Liu, L. A. Wenzler, and N.C. Seeman, Design and Self-Assembly of Two-Dimensional DNA Crystals, Nature 394, 539-544 (1998).

N.C. Seeman, H. Wang, X. Yang, F. Liu, C. Mao, W. Sun, L. Wenzler, Z. Shen, R. Sha, H. Yan, M.H. Wong, P. Sa-Ardyen, B. Liu, H. Qiu, X. Li, J. Qi, S.M. Du, Y. Zhang, J.E. Mueller, T.-J. Fu, Y. Wang, and J. Chen, New Motifs in DNA Nanotechnology, Nanotechnology 9, 257-273 (1998).

N.C. Seeman, J. Chen, Y. Zhang, B. Liu, H. Qiu, T.-J. Fu, Y. Wang, X. Li, X. Yang, J. Qi, F. Liu, L.A. Wenzler, S, Du, J.E. Mueller, H. Wang, C. Mao, W. Sun, Z. Shen, M.H. Wong, H, Yan and R. Sha, A Bottom-Up Approach to Nanotechnology Using DNA, In: Biological Molecules in Nanotechnology, ed. by S.C. Lee, IBC Libraries, Southborough, MA, Chapter 8 (1998).

X. Yang, L.A. Wenzler, J. Qi, X. Li and N.C. Seeman, Ligation of DNA Triangles Containing Double Crossover Molecules, Journal of the American Chemical Society 120, 9779-9786 (1998).

E. Winfree, X. Yang and N.C. Seeman, Universal Computation via Self-assembly of DNA: Some Theory and Experiments, In: DNA Based Computers II, ed.by L.F. Landweber and E.B. Baum, Am. Math. Soc., Providence, pp. 191-213 (1998).

*N.C. Seeman, H. Wang, B. Liu, J. Qi, X. Li, X. Yang, F. Liu, W. Sun, Z. Shen, Y. Wang, R. Sha, C. Mao, S. Zhang, T.-J. Fu, S. M. Du, J.E. Mueller, Y. Zhang and J. Chen, The Perils of Polynucleotides: The Experimental Gap Between the Design and Assembly of Unusual DNA Structures, In: DNA Based Computers II, ed.by L.F. Landweber and E.B. Baum, Am. Math. Soc., Providence, pp. 215-233 (1998).

*N.C. Seeman, Nucleic Acid Nanostructures and Topology. Angewandte Chemie. 110, 3408-3428 (1998); Angewandte Chemie International Edition 37, 3220-3238 (1998).

C. Mao, W. Sun, Z. Shen and N.C. Seeman, A DNA Nanomechanical Device Based on the B-Z Transition, Nature 397, 144-146 (1999).

F. Liu, R. Sha and N.C. Seeman, Modifying the Surface Features of Two-Dimensional DNA Crystals, Journal of the American Chemical Society. 121, 917-922 (1999).

*R. Sha, F. Liu, M. Bruist and N.C. Seeman, Parallel Helical Domains in DNA Branched Junctions Containing 5', 5' and 3', 3' Linkages, Biochemistry 38, 2832-2841 (1999).

*C. Mao, W. Sun and N.C. Seeman, Designed Two-Dimensional DNA Holliday Junction Arrays Visualized by Atomic Force Microscopy, Journal of the American Chemical Society 121, 5437-5443 (1999).

*N.C. Seeman, Synthetic DNA Topology, Molecular Catenanes, Rotaxanes and Knots, ed. by J.-P. Sauvage and C. Dietrich-Buchecker, Wiley-VCH, Weinheim pp. 323-356 (1999).

F. Liu, H. Wang and N.C. Seeman, Short Extensions to Sticky Ends for DNA Nanotechnology and DNA-Based Computation, Nanobiology 4, 257-262 (1999).

*N.C. Seeman, DNA Engineering and its Application to Nanotechnology, Trends in Biotechnology 17, 437-443 (1999).

T. LaBean, H. Yan, J. Kopatsch, F. Liu, E. Winfree, J.H. Reif and N.C. Seeman, The Construction of DNA Triple Crossover Molecules, Journal of the American Chemical Society 122, 1848-1860 (2000).

N.C. Seeman, F. Liu, C. Mao, X. Yang, L. A. Wenzler, R. Sha, W. Sun, Z. Shen, X. Li, J. Qi, Y. Zhang, T.-J. Fu, J. Chen and E. Winfree, Two Dimensions and Two States in DNA Nanotechnology, Proceedings of the 11th Conversation in Biomolecular Stereodynamics, ed. by R.H. Sarma and M.H. Sarma, Adenine Press, New York, 253-262 (2000).

*N.C. Seeman, DNA Nanotechnology: From Topological Control to Structural Control, in Pattern Formation in Biology, Vision and Dynamics, ed. by A.Carbone, M.Gromov, P.Pruzinkiewicz, World Scientific Publishing Company, Singapore, 271-309 (2000).

N.C. Seeman, C. Mao, F. Liu, R. Sha, X. Yang, L. Wenzler, X. Li, Z. Shen, H. Yan, P. Sa-Ardyen, X. Zhang, W. Shen, J. Birac, P. Lukeman, Y. Pinto, J. Qi, B. Liu, H. Qiu, S.M. Du, H. Wang, W. Sun, Y. Wang, T.-J. Fu, Y. Zhang, J.E. Mueller and J. Chen, Nicks, Nodes, and New Motifs for DNA Nanotechnology, Frontiers of Nano-Optoelectronic Systems, ed. by L. Pavesi & E. Buzanova, Kluwer, Dordrecht, 177-198 (2000).

*R. Sha, F. Liu, D.P. Millar N.C. Seeman, Atomic Force Microscopy of Parallel DNA Branched Junction Arrays, Chemistry & Biology 7, 743-751 (2000).

C. Mao, T. LaBean, J.H. Reif and N.C. Seeman, Logical Computation Using Algorithmic Self-Assembly of DNA Triple Crossover Molecules, Nature 407, 493-496 (2000).

*N.C. Seeman, In the Nick of Space: Generalized Nucleic Acid Complementarity and the Development of DNA Nanotechnology, Synlett 2000, 1536-1548 (2000).

*N.C. Seeman, DNA Nicks and Nodes and Nanotechnology, NanoLetters 1, 22-26 (2001).

J.H. Reif, T.H. LaBean & N.C. Seeman, Challenges and Applications for Self-Assembled DNA Nanostructures, Sixth International Workshop on DNA-Based Computers, DNA 2000, Leiden, The Netherlands, (June, 2000) ed. A. Condon, G. Rozenberg. Springer-Verlag, Berlin Heidelberg, Lecture Notes in Computer Science 2054, 173-198, (2001).

*H. Yan, X. Zhang, Z. Shen and N.C. Seeman, A Robust DNA Mechanical Device Controlled by Hybridization Topology, Nature 415, 62-65 (2002).

N.C. Seeman, DNA Nanotechnology: Life's Central Performer in a New Role, Biological Physics Newsletter 2 (1) 2-6 (2002).

N.C. Seeman, It Started with Watson and Crick, But it Sure Didn't End There: Pitfalls and Possibilities beyond the Classic Double Helix, Natural Computing 1, 53-84 (2002).

N.C. Seeman & A.M. Belcher, Emulating Biology: Nanotechnology from the Bottom Up, Proceedings of the National Academy of Sciences (USA) 99 (supp. 2), 6451-6455 (2002).

*R. Sha, F. Liu and N.C. Seeman, Atomic Force Measurement of the Interdomain Angle in Symmetric Holliday Junctions, Biochemistry 41, 5950-5955 (2002).

N.C. Seeman, Key Experimental Approaches in DNA Nanotechnology, Current Protocols in Nucleic Acid Chemistry, Unit 12.1, John Wiley & Sons, New York (2002).

A. Carbone and N.C. Seeman, Circuits and Programmable Self-Assembling DNA Structures, Proc. Nat. Acad. Sci. (USA) 99 12577-12582 (2002).

*X. Zhang, H. Yan, Z. Shen and N.C. Seeman, Paranemic Cohesion of Topologically-Closed DNA Molecules, J Am. Chem. Soc.124, 12940-12941 (2002).

S. Xiao, F. Liu, A. Rosen, J.F. Hainfeld, N.C. Seeman, K.M. Musier-Forsyth & R.A. Kiehl, Self-Assembly of Nanoparticle Arrays by DNA Scaffolding, J. Nanoparticle Research 4, 313-317 (2002).

A. Carbone and N.C. Seeman, Fractal Designs Based on DNA Parallelogram Structures, Natural Computing 1, 469-480 (2002).

N.C. Seeman, DNA in a Material World, Nature 421, 33-37 (2003).

N.C. Seeman, Structural DNA Nanotechnology: A New Organizing Principle for Advanced Nanomaterials, Materials Today 6 (7), 24-29 (2003).

P. Sa-Ardyen, N. Jonoska and N.C. Seeman, Self-Assembling DNA Graphs, DNA-Based Computers VIII, LNCS 2568, Springer-Verlag, Berlin, 1-9 (2003).

H. Yan and N.C. Seeman, Edge-Sharing Motifs in DNA Nanotechnology. Journal of Supramolecular Chemistry 1, 229-237 (2003).

*P. Sa-Ardyen, A.V. Vologodskii and N.C. Seeman, The Flexibility of DNA Double Crossover Molecules. Biophysical Journal 84, 3829-3837 (2003).

N. Jonoska, P. Sa-Ardyen and N.C. Seeman, Computation by Self-Assembly of DNA Graphs, Journal of Genetic Programming and Evolvable Machines 4, 123-137 (2003).

N.C. Seeman, Biochemistry and Structural DNA Nanotechnology: An Evolving Symbiotic Relationship, Biochemistry 42, 7259-7269 (2003).

L. Zhu, P.S. Lukeman, J. Canary & N.C. Seeman, Nylon/DNA: Single-Stranded DNA with Covalently Stitched Nylon Lining, J. Am. Chem. Soc. 125, 10178-10179 (2003).

A. Carbone and N.C. Seeman, Coding and Geometrical Shapes in Nanostructures: a Fractal DNA-Assembly, Natural Computing 2, 133-151 (2003).

N.C. Seeman, DNA Nanostructures for Mechanics and Computing: Nonlinear Thinking With Life's Central Molecule. NanoBiotechnology. Editors, Chad Mirkin and Christof Niemeyer, Wiley-VCH Verlag GmbH & Co., KgaA, Weinheim, Chapter 20, pp 308-318 (2004).

N.C. Seeman, DNA: Beyond the Double Helix, Macromolecular Symposia 201, 237-244 (2003).

N.C. Seeman, At the Crossroads of Chemistry, Biology and Materials: Structural DNA Nanotechnology, Chemistry & Biology 10, 1151-1159 (2003).

P. Sa-Ardyen, N. Jonoska and N.C. Seeman, Self-Assembling DNA Graphs, Natural Computing, 2, 427-438 (2003).

N.C. Seeman, DNA Nanostructures for Mechanics and Computing:  Nonlinear Thinking With Life's Central Molecule.  NanoBiotechnology.  Editors, Chad Mirkin and Christof Niemeyer, Wiley-VCH Verlag GmbH & Co., Weinheim, Chapter 20, pp 308-318 (2004).

*Z. Shen, H. Yan, T. Wang and N.C. Seeman, Paranemic Crossover DNA:  A Generalized Holliday Structure with Applications in Nanotechnology J. Am. Chem. Soc. 126, 1666-1674 (2004).

N. Jonoska, S. Liao, & N.C. Seeman, Transducers with programmable input by DNA Self-assembly, Aspects of Molecular Computing, Lecture Notes in Computer Science 2340, Springer-Verlag, Berlin, 219-240 (2004).

A. Carbone & N.C. Seeman, Molecular Tiling and DNA Self-Assembly, Aspects of Molecular Computing, Lecture Notes in Computer Science 2340, Springer-Verlag, Berlin, 61-83 (2004).

N.C. Seeman.  Nanotechnology and the Double Helix, Scientific American., 290, (6) 64-75 (2004).

P. Sa-Ardyen, N. Jonoska and N.C. Seeman, The Construction of Graphs Whose Edges are DNA Helix Axes, J. Am. Chem. Soc., 126, 6648-6657 (2004).

W.B. Sherman and N.C. Seeman, A Precisely Controlled DNA Bipedal Walking Device, NanoLetters 4, 1203-1207 (2004); Erratum, 4, 1801-1801.

*P.S. Lukeman, A. Mittal, & N.C. Seeman, Two Dimensional PNA/DNA Arrays:  Estimating the Helicity of Unusual Nucleic Acid Polymers, Chemical Communications 2004, 1694-1695 (2004).

N.C. Seeman, DNA Nanotechnology, Encyclopedia of Supramolecular Chemistry, Marcel Dekker, New York, 475-483 (2004).

A. Carbone, C. Mao, P. Constantinou, B. Ding, J. Kopatsch, W. B. Sherman and N.C. Seeman, 3D Fractal DNA Assembly from Coding, Geometry and Protection, Natural Computing 3, 235-252 (2004).

B. Ding, R. Sha & N.C. Seeman, Pseudohexagonal 2D DNA Crystals from Double Crossover Cohesion, J. Am. Chem. Soc. 126, 10230-10231 (2004).

*W. Shen, M. Bruist, S. Goodman & N.C. Seeman, A Nanomechanical Device for Measuring the Excess Binding Energy of Proteins that Distort DNA, Angew. Chem. Int. Ed. 43, 4750-4752 (2004); Angew.Chem. 116, 4854-4856 (2004).

S. Liao and N.C. Seeman, Translation of DNA Signals into Polymer Assembly Instructions, Science 306, 2072-2074 (2004).

J. D. Le, Y. Pinto, N.C. Seeman, K. Musier-Forsyth, T. A. Taton and R.A. Kiehl, Self-Assembly of Nanoelectronic Component Arrays by In Situ Hybridization to 2D DNA Scaffolding, NanoLetters 4, 2343-2347 (2004).

G. Serrano & N.C. Seeman, Nanotecnologia basada en ADN, Revista de Química 19, 11-20 (2004), in Spanish.

N.C. Seeman and P.S. Lukeman, Nucleic Acid Nanostructures, Reports on Progress in Physics 68, 237-270 (2005).

N.C. Seeman, B. Ding , S. Liao , T. Wang, W.B. Sherman, P.E. Constantinou, J. Kopatsch, C. Mao, R. Sha, F. Liu, H. Yan & P.S. Lukeman, Experiments in Structural DNA Nanotechnology:  Arrays and Devices , Proc. SPIE; Nanofabrication:  Technologies, Devices and Applications 5592, 71-81 (2005).

N.C. Seeman, From Genes to Machines:  DNA Nanomechanical Devices, Trends in Biochemical Sciences 30, 119-235 (2005).

N.C. Seeman.  Structural DNA Nanotechnology:  An Overview. Methods in Molecular Biology 303: Bionanotechnology Protocols, Editors, Sandra J. Rosenthal and David W. Wright, Humana Press, Totowa, NJ, pp. 143-166 (2005).

F. Mathieu, S. Liao, C. Mao, J. Kopatsch, T. Wang, and N.C. Seeman, Six-Helix Bundles Designed from DNA, NanoLetters 5, 661-665 (2005).

Sha, R., Zhang, X., Liao, S., Constantinou, P.E., Ding, B., Wang, T., Garibotti, A.V., Zhong, H., Israel, L.B., Wang, X., Wu, G., Chakraborty, B., Chen, J., Zhang, Y., Mao, C., Yan, H., Kopatsch, J., Zheng, J., Lukeman, P.S., Sherman, W.B. and Seeman, N.C., Motifs and Methods in Structural DNA Nanotechnology, Proc. Intl. Conf. Nanomaterials, NANO 2005, July 13-15, 2005, Mepco Schlenk Engineering College, Srivakasi, India, V. Rajendran, ed., pp. 3-10 (2005).

Baryshnikov, Y., Coffman, E., Seeman, N.C. and Yimwadsana, T., Self-Correcting Self-Assembly:  Growth Models and the Hammersley Process, DNA-11, Lecture Notes in Computer Science 3892, A. Carbone & N.A. Pierce, eds., Springer-Verlag, Berlin, 1-11 (2006).

*W.B. Sherman & N.C. Seeman, Design of Low-Stress Nucleic Acid Nanotubes, Bioiphys. J., 90, 4546-4557 (2006).

        J. Zheng, P.E. Constantinou, C. Micheel, A.P. Alivisatos, R.A. Kiehl & N.C. Seeman, 2D Nanoparticle Arrays Show the Organizational Power of Robust DNA Motifs, NanoLetters 6, 1502-1504 (2006).

A.V. Garibotti, S.M. Knudsen, A.D. Ellington & N.C. Seeman, Functional DNAzymes Organized into 2D Arrays, NanoLetters 6, 1505-1507 (2006).

P. Constantinou, T. Wang, J. Kopatsch, L.B. Israel, X. Zhang, B. Ding, W.B. Sherman, X. Wang, J. Zheng, R. Sha, N. C. Seeman, Double Cohesion in Structural DNA Nanotechnology, Organic and Biomolecular Chemistry 4, 3414-3419 (2006).

*J.J. Birac, W.B. Sherman, J. Kopatsch, P.E. Constantinou and N.C. Seeman, GIDEON, A Program for Design in Structural DNA Nanotechnology, J. Mol. Graphics & Modeling 25, 470-480 (2006).

G. Wu & N.C. Seeman, A Method of Multiplying with DNA, Natural Computing 5, 427-441, (2006).

        B. Ding & N.C. Seeman, Operation of a DNA Robot Arm Inserted Into a 2D DNA Crystalline Substrate, Science 314, 1583-1585 (2006).

H. Zhong & N.C. Seeman, RNA Used to Control a DNA Rotary Machine, NanoLetters 6, 2899-2903 (2006).

A.V. Garibotti, S. Liao & N.C. Seeman, A Simple DNA-Based Translation System, NanoLetters 7, 480-483 (2007).

A. Kuzuya, R. Wang, R. Sha & N.C. Seeman, Six-Helix and Eight-Helix DNA Nanotubes Assembled from Half-Tubes, NanoLetters 7, 1757-1763 (2007).

*X. Wang & N.C. Seeman, The Assembly and Characterization of 8-Arm and 12-Arm DNA Branched Junctions, J. Am. Chem. Soc., 129, 8169-8176 (2007).

N.C. Seeman, An Overview of Structural DNA Nanotechnology, Mol. Biotech. 37, 246-257 (2007).

C. Lin, X. Wang, Y. Liu, N.C. Seeman & H. Yan, Rolling Circle Enzymatic Replication of a Complex Multi-Crossover DNA   Nanostructure, J. Am. Chem. Soc., 129, 14475-14481 (2007).

N.C. Seeman, Nanotechnology and the Double Helix, Scientific American Reports, 30-39, September issue (2007).

W. Liu, X. Wang, T. Wang, R. Sha & N.C. Seeman, A PX DNA Triangle Oligomerized Using a Novel Three-Domain Motif, NanoLett 8, 317-322 (2008).

N.C. Seeman, DNA Nanoarchitectures, DNA Nanotechnology, DNA Nanotubes, DNA Self-Assembly,  Nucleic Acids from A to Z, Sabine Müller, Ed., Wiley VCH Weinheim,  (2008), pp 79-80; 81-82; 82-82; 86-86.

*Y. Liu, R. Sha, R. Wang, L. Ding , J.W. Canary, & N.C. Seeman, 2',2'-Ligation Demonstrates the Thermal Dependence of DNA-Directed Positional Control, Tetrahedron 64, 9417-8422 (2008).

B. Chakraborty, R. Sha & N.C. Seeman, A DNA-Based Nanomechanical Device with Three Robust States, Proc. Nat. Acad. Sci. (USA) 105, 17245-17249 (2008).

*C. Lin, S. Rinker, X. Wang, Y. Liu, N. C. Seeman & H. Yan, In Vivo Cloning of Artificial  DNA Nanostructures, Proc. Nat. Acad. Sci. (USA) 105, 17626-17631 (2008).     

H. Gu, J. Chao, S.J. Xiao & N.C. Seeman, Dynamic Patterning Programmed by DNA Tiles Captured on a DNA Origami Substrate, Nature Nanotech. 4, 245-249, (2009).                    

*N. Jonoska, N.C. Seeman & G. Wu, On the Existence of Reporter Strands in DNA-Based Graph Structures,  Theor. Computer Sci. 410, 1448-1460 (2009).

T. Omabegho, R. Sha & N.C. Seeman, A  Bipedal DNA Brownian Motor with Coordinated Legs, Science  324, 67-71 (2009).

C. Liu, N. Jonoska & N.C. Seeman, Reciprocal DNA Nanomechanical Devices Controlled by the Same Set Strands, NanoLetters 9, 2641-2647 (2009).

R. Wang, W. Liu & N.C. Seeman, Prototyping Nanorod Control:  A DNA Double Helix Sheathed within a DNA 6-Helix Bundle, Chem. &. Biol. 16, 862-867 (2009).

*J. Zheng, J.J. Birktoft, Y. Chen, T. Wang, R. Sha, P.E. Constantinou, S.L. Ginell, C. Mao, & N.C. Seeman, From Molecular to Macroscopic via the Rational Design of a Self-Assembled 3D DNA Crystal, Nature 461, 74-77 (2009).

* X. Wang, X. Zhang, C. Mao & N.C. Seeman, Double-Stranded DNA Homology Produces a Physical Signature, Proc. Nat. Acad. Sci. (USA) 107,  12547-12552 (2010).

R. Wang, A. Kuzuya, W. Liu & N.C. Seeman, Blunt-Ended DNA Stacking Interactions in a 3-Helix Motif, Chem. Comm. 46, 4905 - 4907 (2010).

N.C. Seeman, Nanomaterials Based on DNA, Ann. Rev. Biochem. 79, 65-87 (2010).

N.C. Seeman, Structural DNA Nanotechnology:  Growing Along with NanoLetters, NanoLetters 10, 1971-1978 (2010).

N.C. Seeman, Frontiers of science award lecture sponsored by Cosmetics and Toiletries, DNA:  Not Merely the Secret of Life, J. Cosmetic Science 61, 62-63 (2010).

* H. Gu, J. Chao, S.J. Xiao & N.C. Seeman, A Proximity-Based Programmable DNA Nanoscale Assembly Line, Nature 465, 202-205 (2010).

* H. Gu, W. Yang & N.C. Seeman, A DNA Scissors Device Used to Measure MutS Binding to DNA Mis-Pairs, J. Am. Chem. Soc. 132, 4352-4357 (2010).

G. Wu, N. Jonoska & N.C. Seeman, Construction of a DNA Nano-Object Directly Demonstrates Computation, Biosystems 98, 80-84 (2009) DOI: 10.1016/j.biosystems.2009.07.004.

* N.C. Seeman, Structural DNA Nanotechnology:  Growing Along with NanoLetters, NanoLetters 10, 1971-1978 (2010).

* N.C. Seeman, Nanomaterials Based on DNA, Ann. Rev. Biochem. 79, 65-87 (2010).

* R. Wang, A. Kuzuya, W. Liu & N.C. Seeman, Blunt-Ended DNA Stacking Interactions in a 3-Helix Motif, Chem. Comm. 46, 4905 - 4907 (2010).

* T. Wang, R. Sha, J.J. Birktoft, J. Zheng, C. Mao & N.C. Seeman, A DNA Crystal Designed to Contain Two Molecules per Asymmetric Unit, J. Am. Chem. Soc. 132, 15471-15473 (2010).

* W. Liu, H. Zhong, R. Wang & N.C. Seeman, Crystalline Two-Dimensional DNA Origami Arrays, Angew. Chemie 50, 264-267 (2011).

*H.K.K. Subramanian, B. Chakraborty, R. Sha & N.C. Seeman, The Label-Free Unambiguous Detection and Symbolic Display of Single Nucleotide Polymorphisms on DNA Origami, NanoLett. 11, 910-913 (2011).

* T. Ciengshin, R. Sha & N.C. Seeman, Automatic Molecular Weaving Prototyped Using Single-Stranded DNA, Angew. Chemie Int. Ed. 50, 4419-4422 (2011).

* T. Wang, R. Sha, R. Dreyfus, M.E. Leunissen, C. Maass, D. Pine, P.M. Chaikin & N.C. Seeman, Self-Replication of Information-Bearing Nanoscale Patterns, Nature, 478, 225-228 (2011).

* B. Chakraborty, N. Jonoska & N.C. Seeman, A Programmable Transducer Self-Assembled from DNA, Chem. Sci. 3, 168-176 (2012).

* C. Liu, E. Kim, B. Demple & N.C. Seeman, A DNA-Based Nanomechanical Device Used to Characterize the Distortion of DNA by Apo-SoxR Protein, Biochem. 51, 937-943 (2012).

* T. Wang, D. Schiffels, S. M. Cuesta, D. K. Fygenson & N. C. Seeman, Design and Characterization of 1D Nanotubes and 2D Periodic Arrays Self-Assembled From DNA Multi-Helix Bundles, J. Am. Chem. Soc. 134, 1606-1616 (2012).

J.E. Padilla, W. Liu & N.C. Seeman, Hierarchical Self Assembly of Patterns from the Robinson Tilings:  DNA Tile Design in an Enhanced Tile Assembly Model, Natural Computing 11, 323-338 (2012).

* N. Nguyen,  J.J. Birktoft, R. Sha, T. Wang, J. Zheng, P.E. Constantinou, S.L. Ginell, Y. Chen, C. Mao & N.C. Seeman, The Absence of Tertiary Interactions in a Self-Assembled DNA Crystal Structure, J. Mol. Recognition 25, 234-237 (2012).

N. Jonoska & N.C. Seeman, Computing by Molecular Self-Assembly, Interface Focus 2, 504-511 (2012).

* Y. Liu, R. Wang, L. Ding, R. Sha, N.C. Seeman & J.W. Canary,   Templated Synthesis of Nylon Nucleic Acids and Characterization by Nuclease Digestion, Chem. Sci., 3, 1930-1937 (2012).

* N.C. Seeman, J.J. Birktoft, R. Sha, H. Gu, T. Wang, J. Zheng, J. Chao, P. Constantinou, B. Ding & C. Mao, DNA Crystals, Constructs and Devices, Handbook of Nanoscience, Engineering and Technology, 3rd Edition, ed. by W.A Goddard, III, D.W. Brenner, S.E. Lyshevski & G.J. Iafrate, CRC Press, Taylor & Francis Group, New York, 1037-1049 (2012).

* K.-T. Wu, L. Feng, R. Sha, R. Dreyfus, A.Y. Grosberg, N.C. Seeman & P.M. Chaikin, Polygamous Particles, Proc. Nat. Acad. Sci. (USA) 109, 18731-18736 (2012).

* L. Feng, R. Sha, N.C. Seeman and P.M. Chaikin, Topological Interaction by Entangled DNA Loops, Phys. Rev. Lett. 109, 188301 (2012).

* M. Ye, J. Guillaume, Y. Liu, R. Sha, R. Wang, N.C. Seeman & J.W. Canary, Site-Specific Inter-Strand Cross-Links of DNA Duplexes, Chem. Sci. 4, 1319-1329 (2013).

* R. Sha, J.J. Birktoft, N. Nguyen, A.R. Chandrasekaran, J. Zheng, X. Zhao, C. Mao, N.C. Seeman, Self-Assembled DNA Crystals:  The Impact on Resolution of 5'-Phosphates and the DNA Source, NanoLett. 13, 793-797 (2013).

 

 

 

 

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