* Indicates listing
on more than one bibliography.
*N.C. Seeman,
Nucleic Acid Junctions: Building Blocks for Genetic Engineering in Three
Dimensions. In: Biomolecular Stereodynamics, ed. by R.H. Sarma, Adenine Press,
New York (1981), pp. 269-277.
N.C. Seeman and
B.H. Robinson, Simulation of Double Stranded Branch Point Migration. In:
Biomolecular Stereodynamics, ed by R.H. Sarma, Adenine Press, New York (1981),
pp. 279-300.
*N.C. Seeman,
Nucleic Acid Junctions and Lattices. Journal of Theoretical Biology 99, 237-247
(1982).
*N.C. Seeman and
N.R. Kallenbach, Design of Immobile Nucleic Acid Junctions. Biophysical Journal
44, 201-209 (1983).
*N.C. Seeman and
N.R. Kallenbach, Nucleic Acid Junctions, The Tensors of Life? In: Nucleic
Acids: The Vectors of Life, ed. by B. Pullman and J. Jortner, D. Reidel,
Dordrecht, 183-200 (1983).
*N.R. Kallenbach,
R.-I. Ma and N.C. Seeman, An Immobile Nucleic Acid Junction Constructed from
Oligonucleotides. Nature 305, 829-831 (1983).
N.R. Kallenbach,
R.-I. Ma, A.J. Wand, G.H. Veeneman, J.H. van Boom and N.C. Seeman, Fourth Rank
Immobile Nucleic Acid Junctions. Journal of Biomolecular Structure and Dynamics
1, 158-168 (1983).
N.C. Seeman, M.F.
Maestre, R.-I. Ma and N.R. Kallenbach, Physical Characterization of a Nucleic
Acid Junction. In: Progress in Clinical and Biological Research, Vol. 172A: The
Molecular Basis of Cancer, ed. by R. Rein, Alan R. Liss Inc., New York (1985),
pp. 99-108.
D.E. Wemmer, A.J.
Wand, N.C. Seeman and N.R. Kallenbach, NMR Analysis of DNA Junctions: Imino
Proton NMR Studies of Individual Arms and Intact Junction. Biochemistry 24,
5745-5749 (1985).
N.R. Kallenbach and
N.C. Seeman, Stable Branched DNA Structures: DNA Junctions. Comments on
Cellular and Molecular Biophysics 4, 1-16 (1986).
B.H. Robinson and
N.C. Seeman, The Kinetics of Double Stranded Branch Point Migration.
Biophysical Journal 51, 611-626 (1987).
L.A. Marky, N.R.
Kallenbach, K.A. McDonough, N.C. Seeman and K.J. Breslauer, The Melting
Behavior of a Nucleic Acid Junction: A Calorimetric and Spectroscopic Study.
Biopolymers 26, 1621-1634 (1987).
*N.C. Seeman and
N.R. Kallenbach, Nucleic Acid Junctions: A Successful Experiment in
Macromolecular Design. In: Molecular Structure: Chemical Reactivity and
Biological Activity, ed. by J.J. Stezowski J.-L. Huang and M.-C. Shao, Oxford
University Press, Oxford, (1988) pp. 189-194.
M.E.A. Churchill,
T.D. Tullius, N.R. Kallenbach and N.C. Seeman, A Holliday Recombination
Intermediate is Twofold Symmetric. Proceedings of the National Academy of
Sciences (USA) 85, 4653-4656 (1988).
M.L. Petrillo, C.J.
Newton, R.P. Cunningham, R.-I. Ma, N.R. Kallenbach and N.C. Seeman. The
Ligation and Flexibility of 4-Arm DNA Junctions. Biopolymers, 27, 1337-1352
(1988).
J.-H. Chen, M.E.A.
Churchill, T.D. Tullius, N.R. Kallenbach and N.C. Seeman, Construction and
Analysis of Mono-Mobile DNA Junctions. Biochemistry 27, 6032-6038 (1988).
J.E. Mueller, B. Kemper , R.P.
Cunningham, N.R. Kallenbach and N.C. Seeman, T4 Endonuclease VII Cleaves the
Crossover Strands of Holliday Junction Analogs. Proceedings of the National
Academy of Sciences (U.S.A.) 85, 9441-9445 (1988).
N.C. Seeman, J.-H.
Chen and N.R. Kallenbach, Gel Electrophoretic Analysis of DNA Branched
Junctions Electrophoresis 10, 345-354 (1989).
Q. Guo, N.C. Seeman
and N.R. Kallenbach, Site-Specific Interaction of Intercalating Drugs with a
Branched DNA Molecule. Biochemistry 28, 2355-2359 (1989).
M. Lu, Q. Guo, N.C.
Seeman and N.R. Kallenbach, DNase I Cleavage of Branched DNA Molecules, Journal
of Biological Chemistry 264, 20851-20854 (1989).
F. Jensch, H.
Kosak, N.C. Seeman and B. Kemper ,
Cruciform Cutting Endonucleases From S. cerevisiae and Phage T4 Show Conserved
Reactions With Branched DNAs, EMBO Journal, 8, 4325-4334 (1989).
N.C. Seeman, J.E.
Mueller, J.-H. Chen, M.E.A. Churchill, A. Kimball, T.D. Tullius, B. Kemper , R.P.
Cunningham and N.R. Kallenbach, Immobile Junctions Suggest New Features of the
Structural Chemistry of Recombination, In: Structure & Methods: Human
Genome Initiative & DNA Recombination, Vol 1, R.H. Sarma and M.H. Sarma,
eds., Adenine Press, New York, pp. 137-156 (1990).
Q. Guo, M. Lu, N.C.
Seeman and N.R. Kallenbach, Drug Binding by Branched DNA Molecules: Analysis by
Chemical Footprinting of Intercalation into an Immobile Junction,Biochemistry
29, 570-578, (1990).
M. Lu, Q. Guo, R.F.
Pasternack, D.J. Wink. N.C. Seeman and N.R. Kallenbach, Drug Binding by
Branched DNA: Selective Interaction of Tetrapyridyl Porphyrins with an Immobile
Junction, Biochemistry 29, 1614-1624 (1990).
A. Kimball, Q. Guo,
M. Lu, N.R. Kallenbach, R.P. Cunningham, N.C. Seeman and T.D. Tullius,
Conformational Isomers of Holliday Junctions, Journal of Biological Chemistry
265, 6544-6547 (1990).
M. Lu, Q. Guo, N.C.
Seeman and N.R. Kallenbach, Drug Binding by Branched DNA: Selective Interaction
of the Dye Stains-All with an Immobile Junction, Biochemistry 29, 3407-3412
(1990).
J.E. Mueller, C.J.
Newton, F. Jensch, B.
Kemper , R.P. Cunningham, N.R. Kallenbach and N.C. Seeman, Resolution of
Holliday Junction Analogs by T4 Endonuclease VII Can Be Directed By Substrate
Structure, Journal of Biological Chemistry 265, 13918-13924 (1990).
M. Lu, Q. Guo, J.E.
Mueller, B. Kemper
, F.W. Studier, N.C. Seeman and N.R. Kallenbach, Characterization of a
Bimobile DNA Junction, Journal of Biological Chemistry 265, 16778-16785 (1990).
*Y. Wang, J.E.
Mueller, B. Kemper
, and N.C. Seeman, The Assembly and Characterization of 5-Arm and 6-Arm DNA
Junctions, Biochemistry 30, 5667-5674 (1991).
M. Lu, Q. Guo, N.C.
Seeman and N.R. Kallenbach, Parallel and Antiparallel Holliday Junctions Differ
in Structure and Stability, Journal of Molecular Biology 221, 1419-1432 (1991).
M. Lu, Q. Guo, L.A.
Marky, N.C. Seeman and N.R. Kallenbach, Thermodynamics of DNA Chain Branching
Journal of Molecular Biology 223, 781-789 (1992).
*S.M. Du, S. Zhang
and N.C. Seeman, DNA Junctions, Antijunctions and Mesojunctions, Biochemistry
31, 10955-10963 (1992).
T.-J. Fu and N.C.
Seeman, DNA Double Crossover Structures, Biochemistry 32, 3211-3220 (1993).
S. Zhang, T.-J. Fu
and N.C. Seeman, Construction of Symmetric, Immobile DNA Branched Junctions,
Biochemistry 32, 8062-8067 (1993).
*N.C. Seeman and
N.R. Kallenbach, DNA Branched Junctions, Annual Review of Biophysics and
Biomolecular Structure 23, 53-86 (1994).
*T-J. Fu, Y.-C.
Tse-Dinh, and N.C. Seeman, Holliday Junction Crossover Topology, Journal of
Molecular Biology 236, 91-105 (1994).
T.-J. Fu, B. Kemper and
N.C. Seeman, Endonuclease VII Cleavage of DNA Double Crossover Molecules,
Biochemistry 33, 3896-3905 (1994).
S. Zhang, and N.C.
Seeman, Symmetric Holliday Junction Crossover Isomers, Journal of Molecular
Biology 238, 658-668 (1994).
D.M.J. Lilley, R.M.
Clegg, S. Diekmann, N.C. Seeman, E. von Kitzing and P. Hagerman, A Nomenclature
of Junctions and Branchpoints in Nucleic Acids, European Journal of
Biochemistry 230, 1-2 (1995).
*J.A. Sekiguchi,
N.C. Seeman and S. Shuman, Asymmetric Resolution of Holliday Junctions by
Eukaryotic DNA Topoisomerase I. Proceedings of the National Academy of Sciences
(USA) 93, 785-789 (1996).
*H. Qiu, J.C. Dewan
and N.C. Seeman, A DNA Decamer with a Sticky End: The Crystal Structure of
d-CGACGATCGT. J. Mol. Biol. 267, 881-898 (1997).
X. Li, H. Wang and
N.C. Seeman, Direct Evidence for Holliday Junction Crossover Isomerization.
Biochemistry 36, 4240-4247 (1997).
W. Sun, C. Mao, F.
Liu and N.C. Seeman, Sequence Dependence of Branch Migratory Minima. J. Mol.
Biol. 282, 59-70 (1998).
*R. Sha, F. Liu, M.
Bruist and N.C. Seeman, Parallel Helical Domains in DNA Branched Junctions
Containing 5', 5' and 3', 3' Linkages, Biochemistry 38, 2832-2841 (1999).
*C. Mao, W. Sun and
N.C. Seeman, Designed Two-Dimensional DNA Holliday Junction Arrays Visualized by
Atomic Force Microscopy, Journal of the American Chemical Society 121,
5437-5443 (1999).
*W. Sun, C. Mao, H.
Iwasaki, B. Kemper and N.C. Seeman, No Braiding of Holliday Junctions in
Positively Supercoiled DNA Molecules, Journal of Molecular Biology 294, 683-699
(1999).
R. Sha, F. Liu and
N.C. Seeman, Direct Evidence for Spontaneous Branch Migration in Antiparallel
DNA Holliday Junctions, Biochemistry 39, 11514-11522 (2000).
R. Sha, H. Iwasaki,
F. Liu, H. Shinagawa and N.C. Seeman, Cleavage of Symmetric Immobile DNA
Junctions by Ruv C, Biochemistry 39, 11982-11988 (2000).
*R. Sha, F. Liu,
D.P. Millar N.C. Seeman, Atomic Force Microscopy of Parallel DNA Branched
Junction Arrays, Chemistry & Biology 7, 743-751 (2000).
*A. Podtelezhnikov,
C. Mao, N.C. Seeman & A. Vologodskii, Multimerization-Cyclization of DNA
Fragments as a Method of Conformational Analysis, Biophys. J. 79, 2692-2704
(2000).
*R. Sha, F. Liu and
N.C. Seeman, Atomic Force Measurement of the Interdomain Angle in Symmetric
Holliday Junctions, Biochemistry 41, 5950-5955 (2002).
R. Sha, F. Liu, H.
Iwasaki and N.C. Seeman, Parallel Symmetric Immobile DNA Junctions as
Substrates for E. coli RuvC Holliday Junction Resolvase. Biochemistry 41,
10985-10993 (2002).
S. Liao, C. Mao,
J.J. Birktoft, S. Shuman and N.C. Seeman, Resolution of Undistorted Symmetric
Immobile DNA Junctions by Vaccinia Topoisomerase I, Biochemistry 43, 1520-31
(2004).
*X. Wang & N.C.
Seeman, The Assembly and Characterization of 8-Arm and 12-Arm DNA Branched
Junctions, J.
Am. Chem. Soc., 129, 8169-8176 (2007).
*C.
Lin, S. Rinker, X. Wang, Y. Liu, N. C. Seeman & H. Yan, In Vivo Cloning of
Artificial DNA Nanostructures, Proc. Nat. Acad.
Sci. (USA) 105, 17626-17631 (2008).
*C.H.
Spink, L. Ding, Q. Yang, R.D. Sheardy & N.C. Seeman, Thermodynamics of
Forming a Parallel Holliday Crossover, Biophys. J. 97, 528-538 (2009).
*J. Zheng, J.J.
Birktoft, Y. Chen, T. Wang, R. Sha, P.E. Constantinou, S.L. Ginell, C. Mao,
& N.C. Seeman, From Molecular to Macroscopic via the Rational Design of a
Self-Assembled 3D DNA Crystal, Nature 461, 74-77 (2009).
* H. Gu, W. Yang & N.C. Seeman, A DNA Scissors Device
Used to Measure MutS Binding to DNA Mis-Pairs, J. Am. Chem. Soc. 132, 4352-4357 (2010).
* X. Wang, X. Zhang, C.
Mao & N.C. Seeman, Double-Stranded DNA Homology Produces a Physical
Signature, Proc. Nat. Acad.
Sci. (USA) 107, 12547-12552
(2010).
* M.I. Lvovska, N.C. Seeman, R. Sha, T.R. Globus, T.B.
Khromova & T.S. Dorofeeva, THz Characterization of DNA Four-Way Junctions
and its Components, IEEE Trans. Nanotech. 9, 610-617 (2010).
*
H.K.K. Subramanian, B. Chakraborty, R. Sha & N.C. Seeman, The Label-Free Unambiguous
Detection and Symbolic Display of Single Nucleotide Polymorphisms on DNA
Origami, NanoLett.
11, 910-913 (2011).
* T. Wang, R. Sha, R. Dreyfus, M.E. Leunissen, C. Maass, D. Pine, P.M.
Chaikin & N.C. Seeman, Self-Replication of Information-Bearing Nanoscale
Patterns, Nature,
478, 225-228 (2011).
* C. Liu, E. Kim, B. Demple & N.C. Seeman, A
DNA-Based Nanomechanical Device Used to Characterize the Distortion of DNA by
Apo-SoxR Protein, Biochem. 51, 937-943 (2012).
* M. Ye, J. Guillaume, Y. Liu, R. Sha, R. Wang, N.C.
Seeman & J.W. Canary, Site-Specific Inter-Strand Cross-Links of DNA
Duplexes, Chem.
Sci. 4, 1319-1329 (2013).
*D. Niu, R. Sha, H. Jiang, J.W. Canary
& N.C. Seeman, The Unusual and Dynamic Character of PX-DNA, Nucl. Acids Res.
43, 7201-7206 (2015).
*X. Gao, M. Gethers, S.-p Han, W.A. Goddard, III, R. Sha, R.P.
Cunningham, N.C. Seeman, The PX Motif of DNA Binds Specifically to Escherichia coli DNA
Polymerase I, Biochem
58, 575-581 (2019).