* Indicates listing on more than one bibliography.
*N.C. Seeman, Nucleic Acid Junctions: Building Blocks
for Genetic Engineering in Three Dimensions. In: Biomolecular Stereodynamics,
ed. by R.H. Sarma, Adenine Press, New York (1981), pp. 269-277.
N.C. Seeman and B.H. Robinson, Simulation of Double
Stranded Branch Point Migration. In: Biomolecular Stereodynamics, ed by R.H. Sarma, Adenine Press, New York (1981), pp.
279-300.
*N.C. Seeman, Nucleic Acid Junctions and Lattices.
Journal of Theoretical Biology 99, 237-247 (1982).
*N.C. Seeman and N.R. Kallenbach, Design of Immobile
Nucleic Acid Junctions. Biophysical Journal 44, 201-209 (1983).
*N.C. Seeman and N.R. Kallenbach, Nucleic Acid
Junctions, The Tensors of Life? In: Nucleic Acids: The Vectors of Life, ed. by
B. Pullman and J. Jortner, D. Reidel, Dordrecht, 183-200 (1983).
*N.R. Kallenbach, R.-I. Ma and N.C. Seeman, An
Immobile Nucleic Acid Junction Constructed from Oligonucleotides. Nature 305,
829-831 (1983).
N.R. Kallenbach, R.-I. Ma, A.J. Wand, G.H. Veeneman,
J.H. van Boom and N.C. Seeman, Fourth Rank Immobile Nucleic Acid Junctions.
Journal of Biomolecular Structure and Dynamics 1, 158-168 (1983).
N.C. Seeman, M.F. Maestre, R.-I. Ma and N.R.
Kallenbach, Physical Characterization of a Nucleic Acid Junction. In: Progress
in Clinical and Biological Research, Vol. 172A: The Molecular Basis of Cancer,
ed. by R. Rein, Alan R. Liss Inc., New York (1985), pp. 99-108.
D.E. Wemmer, A.J. Wand, N.C. Seeman and N.R.
Kallenbach, NMR Analysis of DNA Junctions: Imino Proton NMR Studies of
Individual Arms and Intact Junction. Biochemistry 24, 5745-5749 (1985).
N.R. Kallenbach and N.C. Seeman, Stable Branched DNA
Structures: DNA Junctions. Comments on Cellular and Molecular Biophysics 4,
1-16 (1986).
B.H. Robinson and N.C. Seeman, The Kinetics of Double
Stranded Branch Point Migration. Biophysical Journal 51, 611-626 (1987).
L.A. Marky, N.R. Kallenbach, K.A. McDonough, N.C.
Seeman and K.J. Breslauer, The Melting Behavior of a Nucleic Acid Junction: A
Calorimetric and Spectroscopic Study. Biopolymers 26, 1621-1634 (1987).
*N.C. Seeman and N.R. Kallenbach, Nucleic Acid
Junctions: A Successful Experiment in Macromolecular Design. In: Molecular
Structure: Chemical Reactivity and Biological Activity, ed. by J.J. Stezowski
J.-L. Huang and M.-C. Shao, Oxford University Press, Oxford, (1988) pp.
189-194.
M.E.A. Churchill, T.D. Tullius, N.R. Kallenbach and
N.C. Seeman, A Holliday Recombination Intermediate is Twofold Symmetric.
Proceedings of the National Academy of Sciences (USA) 85, 4653-4656 (1988).
M.L. Petrillo, C.J. Newton, R.P. Cunningham, R.-I. Ma,
N.R. Kallenbach and N.C. Seeman. The Ligation and Flexibility of 4-Arm DNA
Junctions. Biopolymers, 27, 1337-1352 (1988).
J.-H. Chen, M.E.A. Churchill, T.D. Tullius, N.R.
Kallenbach and N.C. Seeman, Construction and Analysis of Mono-Mobile DNA
Junctions. Biochemistry 27, 6032-6038 (1988).
J.E. Mueller, B. Kemper , R.P.
Cunningham, N.R. Kallenbach and N.C. Seeman, T4 Endonuclease VII Cleaves the
Crossover Strands of Holliday Junction Analogs. Proceedings of the National
Academy of Sciences (U.S.A.) 85, 9441-9445 (1988).
N.C. Seeman, J.-H. Chen and N.R. Kallenbach, Gel
Electrophoretic Analysis of DNA Branched Junctions Electrophoresis 10, 345-354
(1989).
Q. Guo, N.C. Seeman and N.R. Kallenbach, Site-Specific
Interaction of Intercalating Drugs with a Branched DNA Molecule. Biochemistry
28, 2355-2359 (1989).
M. Lu, Q. Guo, N.C. Seeman and N.R. Kallenbach, DNase
I Cleavage of Branched DNA Molecules, Journal of Biological Chemistry 264,
20851-20854 (1989).
F. Jensch, H. Kosak, N.C. Seeman and B. Kemper ,
Cruciform Cutting Endonucleases From S. cerevisiae and Phage T4 Show Conserved
Reactions With Branched DNAs, EMBO Journal, 8,
4325-4334 (1989).
N.C. Seeman, J.E. Mueller, J.-H. Chen, M.E.A.
Churchill, A. Kimball, T.D. Tullius, B. Kemper , R.P.
Cunningham and N.R. Kallenbach, Immobile Junctions Suggest New Features of the
Structural Chemistry of Recombination, In: Structure & Methods: Human
Genome Initiative & DNA Recombination, Vol 1,
R.H. Sarma and M.H. Sarma, eds., Adenine Press, New York, pp. 137-156 (1990).
Q. Guo, M. Lu, N.C. Seeman and N.R. Kallenbach, Drug
Binding by Branched DNA Molecules: Analysis by Chemical Footprinting of
Intercalation into an Immobile Junction,Biochemistry
29, 570-578, (1990).
M. Lu, Q. Guo, R.F. Pasternack, D.J. Wink. N.C. Seeman
and N.R. Kallenbach, Drug Binding by Branched DNA: Selective Interaction of
Tetrapyridyl Porphyrins with an Immobile Junction, Biochemistry 29, 1614-1624
(1990).
A. Kimball, Q. Guo, M. Lu, N.R. Kallenbach, R.P.
Cunningham, N.C. Seeman and T.D. Tullius, Conformational Isomers of Holliday
Junctions, Journal of Biological Chemistry 265, 6544-6547 (1990).
M. Lu, Q. Guo, N.C. Seeman and N.R. Kallenbach, Drug
Binding by Branched DNA: Selective Interaction of the Dye Stains-All with an
Immobile Junction, Biochemistry 29, 3407-3412 (1990).
J.E. Mueller, C.J. Newton, F. Jensch, B. Kemper , R.P.
Cunningham, N.R. Kallenbach and N.C. Seeman, Resolution of Holliday Junction
Analogs by T4 Endonuclease VII Can Be Directed By Substrate Structure, Journal
of Biological Chemistry 265, 13918-13924 (1990).
M. Lu, Q. Guo, J.E. Mueller, B. Kemper , F.W.
Studier, N.C. Seeman and N.R. Kallenbach, Characterization of a Bimobile DNA
Junction, Journal of Biological Chemistry 265, 16778-16785 (1990).
*Y. Wang, J.E. Mueller, B. Kemper , and
N.C. Seeman, The Assembly and Characterization of 5-Arm and 6-Arm DNA
Junctions, Biochemistry 30, 5667-5674 (1991).
M. Lu, Q. Guo, N.C. Seeman and N.R. Kallenbach,
Parallel and Antiparallel Holliday Junctions Differ in Structure and Stability,
Journal of Molecular Biology 221, 1419-1432 (1991).
M. Lu, Q. Guo, L.A. Marky, N.C. Seeman and N.R.
Kallenbach, Thermodynamics of DNA Chain Branching Journal of Molecular Biology
223, 781-789 (1992).
*S.M. Du, S. Zhang and N.C. Seeman, DNA Junctions,
Antijunctions and Mesojunctions, Biochemistry 31, 10955-10963 (1992).
T.-J. Fu and N.C. Seeman, DNA Double Crossover
Structures, Biochemistry 32, 3211-3220 (1993).
S. Zhang, T.-J. Fu and N.C. Seeman, Construction of
Symmetric, Immobile DNA Branched Junctions, Biochemistry 32, 8062-8067 (1993).
*N.C. Seeman and N.R. Kallenbach, DNA Branched
Junctions, Annual Review of Biophysics and Biomolecular Structure 23, 53-86
(1994).
*T-J. Fu, Y.-C. Tse-Dinh, and N.C. Seeman, Holliday
Junction Crossover Topology, Journal of Molecular Biology 236, 91-105 (1994).
T.-J. Fu, B. Kemper and
N.C. Seeman, Endonuclease VII Cleavage of DNA Double Crossover Molecules,
Biochemistry 33, 3896-3905 (1994).
S. Zhang, and N.C. Seeman, Symmetric Holliday Junction
Crossover Isomers, Journal of Molecular Biology 238, 658-668 (1994).
D.M.J. Lilley, R.M. Clegg, S. Diekmann, N.C. Seeman,
E. von Kitzing and P. Hagerman, A Nomenclature of Junctions and Branchpoints in
Nucleic Acids, European Journal of Biochemistry 230, 1-2 (1995).
*J.A. Sekiguchi, N.C. Seeman and S. Shuman, Asymmetric
Resolution of Holliday Junctions by Eukaryotic DNA Topoisomerase I. Proceedings
of the National Academy of Sciences (USA) 93, 785-789 (1996).
*H. Qiu, J.C. Dewan and N.C. Seeman, A DNA Decamer
with a Sticky End: The Crystal Structure of d-CGACGATCGT. J. Mol. Biol. 267,
881-898 (1997).
X. Li, H. Wang and N.C. Seeman, Direct Evidence for
Holliday Junction Crossover Isomerization. Biochemistry 36, 4240-4247 (1997).
W. Sun, C. Mao, F. Liu and N.C. Seeman, Sequence
Dependence of Branch Migratory Minima. J. Mol. Biol. 282, 59-70 (1998).
*R. Sha, F. Liu, M. Bruist and N.C. Seeman, Parallel
Helical Domains in DNA Branched Junctions Containing 5', 5' and 3', 3'
Linkages, Biochemistry 38, 2832-2841 (1999).
*C. Mao, W. Sun and N.C. Seeman, Designed
Two-Dimensional DNA Holliday Junction Arrays Visualized by Atomic Force
Microscopy, Journal of the American Chemical Society 121, 5437-5443 (1999).
*W. Sun, C. Mao, H. Iwasaki, B. Kemper and N.C.
Seeman, No Braiding of Holliday Junctions in Positively Supercoiled DNA
Molecules, Journal of Molecular Biology 294, 683-699 (1999).
R. Sha, F. Liu and N.C. Seeman, Direct Evidence for
Spontaneous Branch Migration in Antiparallel DNA Holliday Junctions,
Biochemistry 39, 11514-11522 (2000).
R. Sha, H. Iwasaki, F. Liu, H. Shinagawa and N.C.
Seeman, Cleavage of Symmetric Immobile DNA Junctions by Ruv C, Biochemistry 39,
11982-11988 (2000).
*R. Sha, F. Liu, D.P. Millar N.C. Seeman, Atomic Force
Microscopy of Parallel DNA Branched Junction Arrays, Chemistry & Biology 7,
743-751 (2000).
*A. Podtelezhnikov, C. Mao, N.C. Seeman & A.
Vologodskii, Multimerization-Cyclization of DNA Fragments as a Method of
Conformational Analysis, Biophys. J. 79, 2692-2704 (2000).
*R. Sha, F. Liu and N.C. Seeman, Atomic Force
Measurement of the Interdomain Angle in Symmetric Holliday Junctions,
Biochemistry 41, 5950-5955 (2002).
R. Sha, F. Liu, H. Iwasaki and N.C. Seeman, Parallel
Symmetric Immobile DNA Junctions as Substrates for E. coli RuvC Holliday
Junction Resolvase. Biochemistry 41, 10985-10993 (2002).
S. Liao, C. Mao, J.J. Birktoft, S. Shuman and N.C.
Seeman, Resolution of Undistorted Symmetric Immobile DNA Junctions by Vaccinia
Topoisomerase I, Biochemistry 43, 1520-31 (2004).
*X. Wang & N.C. Seeman, The Assembly and
Characterization of 8-Arm and 12-Arm DNA Branched Junctions, J. Am. Chem. Soc., 129, 8169-8176
(2007).
*C. Lin, S. Rinker, X. Wang, Y. Liu, N.
C. Seeman & H. Yan, In Vivo Cloning of
Artificial DNA Nanostructures, Proc. Nat. Acad. Sci. (USA) 105,
17626-17631 (2008).
*C.H. Spink, L. Ding, Q. Yang, R.D.
Sheardy & N.C. Seeman, Thermodynamics of Forming a Parallel Holliday
Crossover, Biophys. J. 97, 528-538
(2009).
*J. Zheng, J.J. Birktoft, Y. Chen, T. Wang,
R. Sha, P.E. Constantinou, S.L. Ginell, C. Mao, &
N.C. Seeman, From Molecular to Macroscopic via
the Rational Design of a Self-Assembled 3D DNA Crystal, Nature 461, 74-77 (2009).
* H. Gu, W. Yang & N.C. Seeman, A DNA Scissors Device Used
to Measure MutS Binding to DNA Mis-Pairs, J. Am. Chem. Soc. 132, 4352-4357 (2010).
* X. Wang, X. Zhang, C. Mao & N.C.
Seeman, Double-Stranded DNA Homology Produces a Physical Signature, Proc.
Nat. Acad. Sci. (USA) 107,
12547-12552 (2010).