* Indicates
listing on more than one bibliography.
*N.C. Seeman,
Nucleic Acid Junctions: Building Blocks for Genetic Engineering in Three
Dimensions. In: Biomolecular Stereodynamics, ed. by R.H. Sarma, Adenine Press,
New York (1981), pp. 269-277.
N.C. Seeman
and B.H. Robinson, Simulation of Double Stranded Branch Point Migration. In:
Biomolecular Stereodynamics, ed by R.H. Sarma, Adenine Press, New York (1981),
pp. 279-300.
*N.C. Seeman,
Nucleic Acid Junctions and Lattices. Journal of Theoretical Biology 99, 237-247
(1982).
*N.C. Seeman
and N.R. Kallenbach, Design of Immobile Nucleic Acid Junctions. Biophysical
Journal 44, 201-209 (1983).
*N.C. Seeman
and N.R. Kallenbach, Nucleic Acid Junctions, The Tensors of Life? In: Nucleic
Acids: The Vectors of Life, ed. by B. Pullman and J. Jortner, D. Reidel,
Dordrecht, 183-200 (1983).
*N.R.
Kallenbach, R.-I. Ma and N.C. Seeman, An Immobile Nucleic Acid Junction
Constructed from Oligonucleotides. Nature 305, 829-831 (1983).
N.R.
Kallenbach, R.-I. Ma, A.J. Wand, G.H. Veeneman, J.H. van Boom and N.C. Seeman,
Fourth Rank Immobile Nucleic Acid Junctions. Journal of Biomolecular Structure
and Dynamics 1, 158-168 (1983).
N.C. Seeman,
M.F. Maestre, R.-I. Ma and N.R. Kallenbach, Physical Characterization of a
Nucleic Acid Junction. In: Progress in Clinical and Biological Research, Vol.
172A: The Molecular Basis of Cancer, ed. by R. Rein, Alan R. Liss Inc., New
York (1985), pp. 99-108.
D.E. Wemmer,
A.J. Wand, N.C. Seeman and N.R. Kallenbach, NMR Analysis of DNA Junctions:
Imino Proton NMR Studies of Individual Arms and Intact Junction. Biochemistry
24, 5745-5749 (1985).
N.R.
Kallenbach and N.C. Seeman, Stable Branched DNA Structures: DNA Junctions.
Comments on Cellular and Molecular Biophysics 4, 1-16 (1986).
B.H. Robinson
and N.C. Seeman, The Kinetics of Double Stranded Branch Point Migration.
Biophysical Journal 51, 611-626 (1987).
L.A. Marky,
N.R. Kallenbach, K.A. McDonough, N.C. Seeman and K.J. Breslauer, The Melting
Behavior of a Nucleic Acid Junction: A Calorimetric and Spectroscopic Study.
Biopolymers 26, 1621-1634 (1987).
*N.C. Seeman
and N.R. Kallenbach, Nucleic Acid Junctions: A Successful Experiment in
Macromolecular Design. In: Molecular Structure: Chemical Reactivity and
Biological Activity, ed. by J.J. Stezowski J.-L. Huang and M.-C. Shao, Oxford
University Press, Oxford, (1988) pp. 189-194.
M.E.A.
Churchill, T.D. Tullius, N.R. Kallenbach and N.C. Seeman, A Holliday
Recombination Intermediate is Twofold Symmetric. Proceedings of the National
Academy of Sciences (USA) 85, 4653-4656 (1988).
M.L. Petrillo,
C.J. Newton, R.P. Cunningham, R.-I. Ma, N.R. Kallenbach and N.C. Seeman. The
Ligation and Flexibility of 4-Arm DNA Junctions. Biopolymers, 27, 1337-1352
(1988).
J.-H. Chen,
M.E.A. Churchill, T.D. Tullius, N.R. Kallenbach and N.C. Seeman, Construction
and Analysis of Mono-Mobile DNA Junctions. Biochemistry 27, 6032-6038 (1988).
J.E. Mueller, B. Kemper , R.P.
Cunningham, N.R. Kallenbach and N.C. Seeman, T4 Endonuclease VII Cleaves the
Crossover Strands of Holliday Junction Analogs. Proceedings of the National
Academy of Sciences (U.S.A.) 85, 9441-9445 (1988).
N.C. Seeman,
J.-H. Chen and N.R. Kallenbach, Gel Electrophoretic Analysis of DNA Branched
Junctions Electrophoresis 10, 345-354 (1989).
Q. Guo, N.C.
Seeman and N.R. Kallenbach, Site-Specific Interaction of Intercalating Drugs
with a Branched DNA Molecule. Biochemistry 28, 2355-2359 (1989).
M. Lu, Q. Guo,
N.C. Seeman and N.R. Kallenbach, DNase I Cleavage of Branched DNA Molecules,
Journal of Biological Chemistry 264, 20851-20854 (1989).
F. Jensch, H.
Kosak, N.C. Seeman and B. Kemper ,
Cruciform Cutting Endonucleases From S. cerevisiae and Phage T4 Show Conserved
Reactions With Branched DNAs, EMBO Journal, 8, 4325-4334 (1989).
N.C. Seeman,
J.E. Mueller, J.-H. Chen, M.E.A. Churchill, A. Kimball, T.D. Tullius, B. Kemper , R.P.
Cunningham and N.R. Kallenbach, Immobile Junctions Suggest New Features of the
Structural Chemistry of Recombination, In: Structure & Methods: Human
Genome Initiative & DNA Recombination, Vol 1, R.H. Sarma and M.H. Sarma,
eds., Adenine Press, New York, pp. 137-156 (1990).
Q. Guo, M. Lu,
N.C. Seeman and N.R. Kallenbach, Drug Binding by Branched DNA Molecules:
Analysis by Chemical Footprinting of Intercalation into an Immobile
Junction,Biochemistry 29, 570-578, (1990).
M. Lu, Q. Guo,
R.F. Pasternack, D.J. Wink. N.C. Seeman and N.R. Kallenbach, Drug Binding by
Branched DNA: Selective Interaction of Tetrapyridyl Porphyrins with an Immobile
Junction, Biochemistry 29, 1614-1624 (1990).
A. Kimball, Q.
Guo, M. Lu, N.R. Kallenbach, R.P. Cunningham, N.C. Seeman and T.D. Tullius,
Conformational Isomers of Holliday Junctions, Journal of Biological Chemistry
265, 6544-6547 (1990).
M. Lu, Q. Guo,
N.C. Seeman and N.R. Kallenbach, Drug Binding by Branched DNA: Selective
Interaction of the Dye Stains-All with an Immobile Junction, Biochemistry 29,
3407-3412 (1990).
J.E. Mueller,
C.J. Newton, F. Jensch, B. Kemper , R.P.
Cunningham, N.R. Kallenbach and N.C. Seeman, Resolution of Holliday Junction
Analogs by T4 Endonuclease VII Can Be Directed By Substrate Structure, Journal
of Biological Chemistry 265, 13918-13924 (1990).
M. Lu, Q. Guo,
J.E. Mueller, B.
Kemper , F.W. Studier, N.C. Seeman and N.R. Kallenbach, Characterization of
a Bimobile DNA Junction, Journal of Biological Chemistry 265, 16778-16785
(1990).
*Y. Wang, J.E.
Mueller, B. Kemper
, and N.C. Seeman, The Assembly and Characterization of 5-Arm and 6-Arm DNA
Junctions, Biochemistry 30, 5667-5674 (1991).
M. Lu, Q. Guo,
N.C. Seeman and N.R. Kallenbach, Parallel and Antiparallel Holliday Junctions
Differ in Structure and Stability, Journal of Molecular Biology 221, 1419-1432
(1991).
M. Lu, Q. Guo,
L.A. Marky, N.C. Seeman and N.R. Kallenbach, Thermodynamics of DNA Chain
Branching Journal of Molecular Biology 223, 781-789 (1992).
*S.M. Du, S.
Zhang and N.C. Seeman, DNA Junctions, Antijunctions and Mesojunctions,
Biochemistry 31, 10955-10963 (1992).
T.-J. Fu and
N.C. Seeman, DNA Double Crossover Structures, Biochemistry 32, 3211-3220
(1993).
S. Zhang,
T.-J. Fu and N.C. Seeman, Construction of Symmetric, Immobile DNA Branched
Junctions, Biochemistry 32, 8062-8067 (1993).
*N.C. Seeman
and N.R. Kallenbach, DNA Branched Junctions, Annual Review of Biophysics and
Biomolecular Structure 23, 53-86 (1994).
*T-J. Fu,
Y.-C. Tse-Dinh, and N.C. Seeman, Holliday Junction Crossover Topology, Journal
of Molecular Biology 236, 91-105 (1994).
T.-J. Fu, B. Kemper and
N.C. Seeman, Endonuclease VII Cleavage of DNA Double Crossover Molecules,
Biochemistry 33, 3896-3905 (1994).
S. Zhang, and
N.C. Seeman, Symmetric Holliday Junction Crossover Isomers, Journal of
Molecular Biology 238, 658-668 (1994).
D.M.J. Lilley,
R.M. Clegg, S. Diekmann, N.C. Seeman, E. von Kitzing and P. Hagerman, A
Nomenclature of Junctions and Branchpoints in Nucleic Acids, European Journal
of Biochemistry 230, 1-2 (1995).
*J.A.
Sekiguchi, N.C. Seeman and S. Shuman, Asymmetric Resolution of Holliday
Junctions by Eukaryotic DNA Topoisomerase I. Proceedings of the National
Academy of Sciences (USA) 93, 785-789 (1996).
*H. Qiu, J.C.
Dewan and N.C. Seeman, A DNA Decamer with a Sticky End: The Crystal Structure
of d-CGACGATCGT. J. Mol. Biol. 267, 881-898 (1997).
X. Li, H. Wang
and N.C. Seeman, Direct Evidence for Holliday Junction Crossover Isomerization.
Biochemistry 36, 4240-4247 (1997).
W. Sun, C.
Mao, F. Liu and N.C. Seeman, Sequence Dependence of Branch Migratory Minima. J.
Mol. Biol. 282, 59-70 (1998).
*R. Sha, F.
Liu, M. Bruist and N.C. Seeman, Parallel Helical Domains in DNA Branched Junctions
Containing 5', 5' and 3', 3' Linkages, Biochemistry 38, 2832-2841 (1999).
*C. Mao, W.
Sun and N.C. Seeman, Designed Two-Dimensional DNA Holliday Junction Arrays
Visualized by Atomic Force Microscopy, Journal of the American Chemical Society
121, 5437-5443 (1999).
*W. Sun, C.
Mao, H. Iwasaki, B. Kemper and N.C. Seeman, No Braiding of Holliday Junctions
in Positively Supercoiled DNA Molecules, Journal of Molecular Biology 294,
683-699 (1999).
R. Sha, F. Liu
and N.C. Seeman, Direct Evidence for Spontaneous Branch Migration in
Antiparallel DNA Holliday Junctions, Biochemistry 39, 11514-11522 (2000).
R. Sha, H.
Iwasaki, F. Liu, H. Shinagawa and N.C. Seeman, Cleavage of Symmetric Immobile
DNA Junctions by Ruv C, Biochemistry 39, 11982-11988 (2000).
*R. Sha, F.
Liu, D.P. Millar N.C. Seeman, Atomic Force Microscopy of Parallel DNA Branched
Junction Arrays, Chemistry & Biology 7, 743-751 (2000).
*A.
Podtelezhnikov, C. Mao, N.C. Seeman & A. Vologodskii, Multimerization-Cyclization
of DNA Fragments as a Method of Conformational Analysis, Biophys. J. 79,
2692-2704 (2000).
*R. Sha, F.
Liu and N.C. Seeman, Atomic Force Measurement of the Interdomain Angle in
Symmetric Holliday Junctions, Biochemistry 41, 5950-5955 (2002).
R. Sha, F.
Liu, H. Iwasaki and N.C. Seeman, Parallel Symmetric Immobile DNA Junctions as
Substrates for E. coli RuvC Holliday Junction Resolvase. Biochemistry 41,
10985-10993 (2002).
S. Liao, C.
Mao, J.J. Birktoft, S. Shuman and N.C. Seeman, Resolution of Undistorted
Symmetric Immobile DNA Junctions by Vaccinia Topoisomerase I, Biochemistry 43,
1520-31 (2004).
*X. Wang &
N.C. Seeman, The Assembly and Characterization of 8-Arm and 12-Arm DNA Branched
Junctions, J. Am. Chem. Soc.,
129, 8169-8176 (2007).